Research Projects

 

Project 1: Oral pathogen-triggered progression of oral squamous cell carcinoma.

Research Project Leader: Huang, George, PhD

Mentors: Drs. Gerwald Koehler and Lijun Xia

Dr. I-Hsiu (George) Huang is an Assistant Professor of Biochemistry and Microbiology at OSU-CHS. Dr. Huang worked on his doctorate with Dr. Mahfuzur Sarker at Oregon State University studying Clostridium perfringens. Dr. Huang received postdoctoral training under Dr. Felicia Qi at Oklahoma University Health Sciences Center studying interspecies interactions of pathogenic oral bacteria. He received additional postdoctoral training at the University of Texas Health Science Center at Houston under Dr. Hung Ton-That on cell surface protein assembly in Gram positive bacteria. From 2012-2020, Dr. Huang was an associate professor of Microbiology at National Cheng Kung University where he worked on the pathogenesis of Clostridioides difficile. Now Dr. Huang seeks to understand how the anaerobic oral pathogen Prevotella intermedia stimulates oral cancer formation and progression. For this purpose he developed  model systems to detect cancer cell proliferation and metastasis as a phenotype of microbial carcinogenesis. He uses these models to identify genetic traits of carcinogenic bacteria and the corresponding oncogenic signaling pathways. Dr. Huang is mentored by Dr. Gerwald Koehler and Dr. Lijun Xia, who leads the CMRO-COBRE. Dr. Huang strengthens the OCMR-COBRE with expertise in genetics and small animal disease models.

 

Project 2: Engineering host-determinants of novel gut microviruses.

Research Project Leader: Kirchberger, Paul, PhD

Mentors: Drs. Mostafa Elshahed and Clint Jones

Dr. Paul Kirchberger is a molecular and evolutionary biologist focusing primarily on the biology of mobile genetic elements such as bacteriophages. Dr. Kirchberger trained under Dr. Ellen Zechner and Dr. Kristina Sefc at the Karl Franzens University of Graz, Austria, studying phage-bacteria interactions and phylogenetic reconstruction in eukaryotes, respectively. He obtained his Ph.D. with Dr. Yann Boucher at the University of Alberta, Canada, studying the ecology and evolution of Vibrio cholerae populations. He developed his current research direction while a postdoctoral scientist in Dr. Howard Ochman’s laboratory at the University of Texas, Austin. Dr. Kirchberger discovered that single-stranded DNA phages of the family Microviridae dominate the human intestinal virome. He developed a novel model system to engineer and grow Microviruses through whole genome synthesis and transformation. As a new investigator, he seeks to understand how microviruses influence anaerobic bacterial hosts in the human gut and how their genetic malleability can be used to manipulate the microbiome rationally. Dr. Kirchberger is mentored by Dr. Mostafa Elshahed, an anaerobic microbiologist and metagenomics expert, and Dr. Clint Jones, a veteran virologist, whose expertise greatly complements Dr. Kirchberger’s. To the OCMR-COBRE, Dr. Kirchberger contributes his knowledge and skills in computational and physical analyses of bacteriophages.

 

Project 3: Microbiome response to dietary carotenoids.

Research Project Leader: Lin, Daniel, PhD

Mentors: Drs. Stephen Clarke and Janeen Salak-Johnson

Dr. Dingbo (Daniel) Lin is a nutritional biochemist with a primary focus on metabolism and the microbiome. His PhD training was in stress biochemistry and physiology. He trained as a postdoctoral fellow in the laboratory of Dr. Dolores Takemoto where he investigated the junctional gap regulation of the eye in rodent models. He joined the Human Nutrition Department at Kansas State University before moving to OSU-STW. His research focuses on the health benefits of bioactive dietary carotenoids (e.g., xanthophylls) and the metabolic enzyme beta-carotene oxygenase 2 (BCO2); he seeks to determine their impact on gut microbiome homeostasis, host immune cell metabolism, and chronic inflammation during the development of obesity and type 2 diabetes. Dr. Lin is mentored by Dr. Stephen Clarke, an epigenetics and nutritional metabolism expert, and Dr. Janeen Salak-Johnson, an expert in stress physiology, immunology, and microbiomes using whole animal systems. Dr. Lin is transitioning his career to focus more on the role of the microbiota in mediating the health benefits of dietary carotenoids and their microbial metabolism. He uses the Anaerobic Microbiology Core to study carotenoid-anaerobic microbial interactions in microbes and host cells. Dr. Lin shares his expertise in nutritional metabolism and the impact of nutrition on the host immune system.

 

Project 4: Characterizing Pathogen-Mediated Production of Secondary Metabolites in the Human Aerodigestive Tract Microbiome.

Research Project Leader: Stubbendieck, Reed, PhD

Mentors: Drs. Paul A. Lawson and Matt Traxler

Bacteria prevent pathogen colonization of the lower digestive and respiratory tracts.

Dr. Stubbendieck is a geneticist focusing primarily on bacterial interactions and specialized metabolism. His doctoral training was with Dr. Paul Straight at Texas A&M University, where he studied the mechanisms of action, resistance, and sensing of antibiotic linearmycins in a model system of interspecies bacterial competition. Dr. Stubbendieck trained as a postdoctoral fellow with Dr. Cameron Currie at the University of Wisconsin- Madison where he characterized siderophores produced by nasal bacteria to mediate resource competition and identified the biosynthetic potential of human aerodigestive tract microbiomes to produce specialized metabolites. Dr. Stubbendieck is a new investigator who is mapping specialized metabolite biosynthetic gene clusters of aerodigestive microbiota in the nasopharynx. He seeks to determine the identify of antimicrobials produced by commensal microbes that specifically target invading pathogens without harming the microbiota. The insights gained will facilitate the discovery of new bioactive natural products and inform our understanding of ecological interactions within the microbiome. Dr. Paul Lawson, an expert in microbial taxonomy, mentors Dr. Stubbendieck. Dr. Stubbendieck’s expertise in natural product chemistry and specialized metabolites that mediate microbe-microbe, microbe-host, and microbe-virus interactions supports the research of fellow RPLs. The Anaerobic Core facilitates his project by culturing bacteria at the aerobic-to-anaerobic transition and characterizing the metabolites produced by the aerodigestive microbiota.

 

Project 5: The adolescent microbiome-gut-brain axis as a potential target in opioid abuse disorders.

Research Project Leader: Vazquez Sanroman, Dolores, PhD

Mentors: Drs. Gerwald Koehler and Kyle Simmons

Dr. Vazquez Sanroman is a first-generation, Mexican-born immigrant (Hispanic). She is a neuroscientist and cell biologist focusing primarily on adolescent brain neurobiology. She trained with Dr. Marta Miquel at University Jaime in Spain and Dr. Ferdinando Rossi at the Neuroscience Institute Cavalieri Ottolenghi at the University of Turin, Italy. Her research focused on the neurobiology of psychostimulant effects on the adolescent brain. Dr. Vazquez Sanroman received postdoctoral training as a National Institute for Drug Abuse (NIDA) fellow in the laboratory of Dr. Michael Bardo in the Center for Drug Abuse Research Translation (CDART) funded by NIH-NIDA at the University of Kentucky. There she developed a translational model of negative urgency that provided a more comprehensive understanding of the adolescent neural system in risk-related traits relevant to the design of tailored anti-drug prevention intervention messages. Her research project is unique in testing the hypothesis that brain-derived neurotrophic factor (BDNF) deficiency is associated with brain-gut communication changes relevant in opioid abuse disorders and after oxycodone withdrawal. Convinced that the microbiota plays a role in opioid abuse and recovery, Dr. Vazquez Sanroman is transitioning her research career to include anaerobic microbiology, physiology, and metabolism research approaches. She uses the Anaerobic Microbiology Core to determine microbiome function in opioid-induced dysbiosis. Dr. Vazquez Sanroman brings expertise in understanding the microbiome-gut-brain axis. Drs. Gerwald Koehler and Kyle Simmons at OSU-CHS mentor her.